Publications

Cui Su

• Publications
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• A dynamics-based approach for the target control of Boolean networks.
  Cui Su and Jun Pang.
  In Proc. 11th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB'20, pp. xxx-xxx. ©ACM Press, 2020. (To appear)
• Sequential temporary and permanent control of Boolean networks.
  Cui Su and Jun Pang.
  In Proc. 18th International Conference on Computational Methods in Systems Biology - CMSB'20, Lecture Notes in Computer Science xxxx, pp. xxx-xxx. ©Springer-Verlag, 2020. (To appear)

• Controlling large Boolean networks with temporary and permanent perturbations.
  Cui Su, Soumya Paul, and Jun Pang.
  In Proc. 23rd International Symposium on Formal Methods - FM'19, Lecture Notes in Computer Science 11800, pp. 707-724. ©Springer-Verlag, 2019.
• Sequential reprogramming of Boolean networks made practical.
  Hugues Mandon, Cui Su, Stefan Haar, Jun Pang, and Loïc Paulevé.
  In Proc. 17th International Conference on Computational Methods in Systems Biology - CMSB'19, Lecture Notes in Computer Science 11773, pp. 3-19. ©Springer-Verlag, 2019. (Best Paper Award)
• Scalable control of asynchronous Boolean networks.
  Cui Su, Soumya Paul, and Jun Pang.
  In Proc. 17th International Conference on Computational Methods in Systems Biology - CMSB'19, Lecture Notes in Computer Science 11773, pp. 364-367. ©Springer-Verlag, 2019.
• Controlling large Boolean networks with single-step perturbations.
  Alexis Baudin, Soumya Paul, Cui Su, and Jun Pang.
  Bioinformatics 35(14): i558-i567, 2019.
  (Special issue of 27th Conference on Intelligent Systems for Moblecular Biology and 18th European Conference on Computational Biology - ISMB/ECCB'19)
• Algorithms for the sequential reprogramming of Boolean networks.
  Hugues Mandon, Cui Su, Jun Pang, Soumya Paul, Stefan Haar, and Loïc Paulevé.
  IEEE/ACM Transactions on Computational Biology and Bioinformatics 16(5): 1610-1619, 2019.
• An efficient approach towards the source-target control of Boolean networks.
  Soumya Paul, Cui Su, Jun Pang, and Andrzej Mizera.
  IEEE/ACM Transactions on Computational Biology and Bioinformatics xx(x): xx-xx, 201X. (To appear)
• Towards optimal decomposition of Boolean networks.
  Cui Su, Jun Pang, and Soumya Paul.
  IEEE/ACM Transactions on Computational Biology and Bioinformatics xx(x): xx-xx, 201x. (To appear)
  (Special issue of 17th Asia Pacific Bioinformatics Conference - APBC'19)

• Towards the existential control of Boolean networks: a preliminary report.
  Soumya Paul, Jun Pang, and Cui Su.
  In Proc. 4th International Symposium on Dependable Software Engineering: Theories, Tools, and Applications - SETTA'18, Lecture Notes in Computer Science 10998, pp. 142-149. ©Springer-Verlag, 2018.
• On the full control of Boolean networks.
  Soumya Paul, Jun Pang, and Cui Su.
  In Proc. 16th International Conference on Computational Methods in Systems Biology - CMSB'18, Lecture Notes in Computer Science 11095, pp. 313-317. ©Springer-Verlag, 2018.
• A decomposition-based approach towards the control of Boolean networks.
  Soumya Paul, Cui Su, Jun Pang, and Andrzej Mizera.
  In Proc. 9th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB'18, pp. 11-20. ©ACM Press, 2018.
• ASSA-PBN: A toolbox for probabilistic Boolean networks.
  Andrzej Mizera, Jun Pang, Cui Su, and Qixia Yuan.
  IEEE/ACM Transactions on Computational Biology and Bioinformatics 15(4): 1203-1216, 2018.